Package: lme4breeding 1.0.31
lme4breeding: Relationship-Based Mixed-Effects Models
Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the 'lme4' machinery. The core computational algorithms are implemented using the 'Eigen' 'C++' library for numerical linear algebra and 'RcppEigen' 'glue'.
Authors:
lme4breeding_1.0.31.tar.gz
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lme4breeding.pdf |lme4breeding.html✨
lme4breeding/json (API)
| # Install 'lme4breeding' in R: |
| install.packages('lme4breeding', repos = c('https://covaruber.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/covaruber/lme4breeding/issues
- A_example - Broad sense heritability calculation.
- A_gryphon - Gryphon data from the Journal of Animal Ecology
- A_ige - Data to fit indirect genetic effects.
- DT_augment - DT_augment design example.
- DT_btdata - Blue Tit Data for a Quantitative Genetic Experiment
- DT_cornhybrids - Corn crosses and markers
- DT_cpdata - Genotypic and Phenotypic data for a CP population
- DT_example - Broad sense heritability calculation.
- DT_expdesigns - Data for different experimental designs
- DT_fulldiallel - Full diallel data for corn hybrids
- DT_gryphon - Gryphon data from the Journal of Animal Ecology
- DT_h2 - Broad sense heritability calculation.
- DT_halfdiallel - Half diallel data for corn hybrids
- DT_ige - Data to fit indirect genetic effects.
- DT_legendre - Simulated data for random regression
- DT_mohring - Full diallel data for corn hybrids
- DT_polyploid - Genotypic and Phenotypic data for a potato polyploid population
- DT_rice - Rice lines dataset
- DT_sleepstudy - Reaction times in a sleep deprivation study
- DT_technow - Genotypic and Phenotypic data from single cross hybrids
- DT_wheat - Wheat lines dataset
- DT_yatesoats - Yield of oats in a split-block experiment
- DTi_cornhybrids - Corn crosses and markers
- GT_cornhybrids - Corn crosses and markers
- GT_cpdata - Genotypic and Phenotypic data for a CP population
- GT_polyploid - Genotypic and Phenotypic data for a potato polyploid population
- GT_rice - Rice lines dataset
- GT_wheat - Wheat lines dataset
- GTn_rice - Rice lines dataset
- MP_cpdata - Genotypic and Phenotypic data for a CP population
- MP_polyploid - Genotypic and Phenotypic data for a potato polyploid population
- Md_technow - Genotypic and Phenotypic data from single cross hybrids
- Mf_technow - Genotypic and Phenotypic data from single cross hybrids
- P_gryphon - Gryphon data from the Journal of Animal Ecology
Last updated 23 days agofrom:32b6a6baf4. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 26 2024 |
| R-4.5-win | WARNING | Aug 26 2024 |
| R-4.5-linux | WARNING | Aug 26 2024 |
| R-4.4-win | WARNING | Aug 26 2024 |
| R-4.4-mac | WARNING | Aug 26 2024 |
| R-4.3-win | WARNING | Aug 26 2024 |
| R-4.3-mac | WARNING | Aug 26 2024 |
Exports:A.matadd.diallel.varsadjBetaatcg1234bbasisbuild.HMMcoercefittedgetMMEimputevleglmebreedoverlayranefredmmresidualsrrmsimagesmmstackTraittpsumat
Dependencies:bootcrayonlatticelme4MASSMatrixminqanlmenloptrRcppRcppEigen
Fitting genotype by environment models in lme4breeding
Rendered fromlmebreed.gxe.Rmdusingknitr::rmarkdownon Aug 26 2024.Last update: 2024-08-01
Started: 2024-05-02
Quantitative genetics using the lme4breeding package
Rendered fromlmebreed.qg.Rmdusingknitr::rmarkdownon Aug 26 2024.Last update: 2024-08-26
Started: 2024-05-05
